CIMMYT Research Data & Software Repository Network

Metrics

402,237 Downloads

CIMMYT institutional network of scientific datasets and software repositories.

Cereal Systems Initiative for South Asia (CSISA) Research Data

CIMMYT Research Data

CIMMYT Research Software

International Wheat Yield Partnership Research Data

Sustainable and Resilient Farming Systems Intensification in the Eastern Gangetic Plains (SRFSI) Research Data

Crops to End Hunger (CtEH) Data

CIMMYT Seeds of Discovery

BNI-CropSustaiN Research Data and Protocols

Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

11,401 to 11,410 of 12,305 Results

DArTSeq_SNPs_45610samples_102474markers.FJ_project.zip Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Unknown - 1.7 GB - MD5: 09d279adc70dfd2d953ffe92c0b520d4 Genotypic data DArtSeq SNP call data stored in a Flapjack project format to allow immediate upload to the Flapjack software for visualization and analysis
DArTSeq_SNPs_45610samples_102474markers.FJ.txt.zip Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Unknown - 596.3 MB - MD5: 91e690cb820ff467c1fe73832c5882f4 Genotypic data DArtSeq SNP call data in a tab-delimited text file. This can be used for uploading to Flapjack in conjunction with the map file. Please note that this matrix is inverted from the normal Flapjack format so the appropriate parameter must be changed in the Flapjack import tool.
DArTSeq_SNPs_report_data_dictionary.txt Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Plain Text - 2.2 KB - MD5: 945162b58c7b76b74b42e69cd70c8896 Data dictionary A description of the columns of information and header row information present in the DArTSeq SNPs csv genotypic results file.
DArTSeq_wheat_genotyping_protocol.pdf Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Adobe PDF - 188.5 KB - MD5: 39588041c9433250f9d59f96ad81feaa Protocol
DNA extraction protocol_for_genotyping_CIMMYT.pdf Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Adobe PDF - 85.1 KB - MD5: 78cfd5d827195a021845bd676223fecc Protocol Protocol used for DNA extraction prior to genotyping
Flapjack_memory_allocation_increase.pdf Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Adobe PDF - 226.1 KB - MD5: fc3714ed31498c14e6691cd3ea06df07 Protocol The files released with this study are so large that they cannot be loaded into Flapjack using the default memory allocation but this protocol describes how to increase the memory available to Flapjack.
md5sum_hash.txt Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Plain Text - 514 B - MD5: 32e3390296025fa11580a62efe3be6c7 Checksum file This file can be used to verify the integrity of the files once they have been downloaded and unzipped.
SampleIDvsGID_45610samples.txt Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Plain Text - 931.1 KB - MD5: 565a06647fcf7ab6c5616df9a96666bd Mapping file This file can be used to map between the DNA Sample ID used to identify samples in the DArTSeq genotypic results files and the GID (Germplasm ID) that is used to identify CIMMYT germplasm.
Drought.Phe_and_Bands.RData Jul 20, 2016 - Prediction models for canopy hyperspectral reflectance in wheat breeding data Unknown - 19.6 MB - MD5: 6843484d197d0c2b16dd676fc2237fbe
EarlyHeat.Phe_and_Bands.RData Jul 20, 2016 - Prediction models for canopy hyperspectral reflectance in wheat breeding data Unknown - 19.7 MB - MD5: e753295fe3472f3ee7c25ddfed2ae9af

DArTSeq_SNPs_45610samples_102474markers.FJ_project.zip

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Unknown - 1.7 GB -

Genotypic data

DArtSeq SNP call data stored in a Flapjack project format to allow immediate upload to the Flapjack software for visualization and analysis

DArTSeq_SNPs_45610samples_102474markers.FJ.txt.zip

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Unknown - 596.3 MB -

Genotypic data

DArtSeq SNP call data in a tab-delimited text file. This can be used for uploading to Flapjack in conjunction with the map file. Please note that this matrix is inverted from the normal Flapjack format so the appropriate parameter must be changed in the Flapjack import tool.

DArTSeq_SNPs_report_data_dictionary.txt

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Plain Text - 2.2 KB -

Data dictionary

A description of the columns of information and header row information present in the DArTSeq SNPs csv genotypic results file.

DArTSeq_wheat_genotyping_protocol.pdf

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Adobe PDF - 188.5 KB -

Protocol

DNA extraction protocol_for_genotyping_CIMMYT.pdf

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Adobe PDF - 85.1 KB -

Protocol

Protocol used for DNA extraction prior to genotyping

Flapjack_memory_allocation_increase.pdf

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Adobe PDF - 226.1 KB -

Protocol

The files released with this study are so large that they cannot be loaded into Flapjack using the default memory allocation but this protocol describes how to increase the memory available to Flapjack.

md5sum_hash.txt

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Plain Text - 514 B -

Checksum file

This file can be used to verify the integrity of the files once they have been downloaded and unzipped.

SampleIDvsGID_45610samples.txt

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Plain Text - 931.1 KB -

Mapping file

This file can be used to map between the DNA Sample ID used to identify samples in the DArTSeq genotypic results files and the GID (Germplasm ID) that is used to identify CIMMYT germplasm.

Drought.Phe_and_Bands.RData

Jul 20, 2016 - Prediction models for canopy hyperspectral reflectance in wheat breeding data

Unknown - 19.6 MB -

EarlyHeat.Phe_and_Bands.RData

Jul 20, 2016 - Prediction models for canopy hyperspectral reflectance in wheat breeding data

Unknown - 19.7 MB -

Add Data

Share Dataverse

Link Dataverse

Reset Modifications