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1 to 10 of 19 Results
Oct 14, 2020
Ángela Pacheco; Sergio Pérez; Gregorio Alvarado; Jesús Cerón; Francisco Rodríguez; José Crossa; Juan Burgueño, 2017, "RIndSel Selection indeces for plant breeding", https://hdl.handle.net/11529/10854, CIMMYT Research Data & Software Repository Network, V4
A genomic selection index (GSI) is a linear combination of genomic estimated breeding values that uses genomic markers to predict the net genetic merit and select parents from a nonphenotyped testing population. RIndSel is a software that calculated some different index like: Eig...
Oct 14, 2020
Ibnou Dieng; Francisco Rodríguez; Gregorio Alvarado; Ángela Pacheco; Juan Burgueño, 2020, "ViTSel - Data visualization for selection", https://hdl.handle.net/11529/10548519, CIMMYT Research Data & Software Repository Network, V2
ViTSel is and R based software to visualize results of multi-environmental multi-trait analysis for selection in plant breeding. Given a matrix of genotype by environments in rows and traits in columns it produces several descriptive statistics and figures to explore results. It...
Aug 20, 2020
Pacheco, Ángela; Alvarado, Gregorio; Rodríguez, Francisco; Burgueño, Juan, 2016, "BIO-R (Biodiversity analysis with R for Windows) Version 3.0", https://hdl.handle.net/11529/10820, CIMMYT Research Data & Software Repository Network, V10
BIO-R is a set of R programs that do biodiversity analysis of molecular data, in order to calculate heterozygosity, diversity among and within groups, shannon index, number of effective allele, percent of polymorphic loci, Rogers distance, Nei distance, cluster analysis and multi...
May 27, 2020
Ángela Pacheco; Francisco Rodríguez; Gregorio Alvarado; Mateo Vargas; Marco López; José Crossa; Juan Burgueño, 2017, "STAD-R Descriptive statistics for experimental designs", https://hdl.handle.net/11529/10853, CIMMYT Research Data & Software Repository Network, V5
STAD-R is a set of R programs that performs descriptive statistics, in order to make boxplots and histograms. STAD-R was designed because is necessary before than the thing, check if the dataset have the same number of repetitions, blocks, genotypes, environments, if we have miss...
Mar 19, 2020
Rodríguez, Francisco; Alvarado, Gregorio; Pacheco, Ángela; Crossa, José; Burgueño, Juan, 2015, "AGD-R (Analysis of Genetic Designs with R for Windows) Version 5.0", https://hdl.handle.net/11529/10202, CIMMYT Research Data & Software Repository Network, V14
A major objective of biometrical genetics is to explore the nature of gene action in determining quantitative traits. This also includes determination of the number of major genetic factors or genes responsible for the traits. Diallel Mating Designs have been designed to deal wit...
Feb 20, 2020
Ayala Hernández, Claudio César; Vivek, Bindiganavile; Banziger, Marianne, 2020, "Fieldbook2020", https://hdl.handle.net/11529/10548370, CIMMYT Research Data & Software Repository Network, V1
The Fieldbook2020 software provides offline capabilities for managing pedigrees, phenotypic data, seed stocks, and fieldbooks for a maize breeding program. CIMMYT is transitioning toward the use of an online Enterprise Breeding System for managing breeding information and perform...
Oct 30, 2019
Alvarado, Gregorio; López, Marco; Vargas, Mateo; Pacheco, Ángela; Rodríguez, Francisco; Burgueño, Juan; Crossa, José, 2015, "META-R (Multi Environment Trail Analysis with R for Windows) Version 6.04", https://hdl.handle.net/11529/10201, CIMMYT Research Data & Software Repository Network, V23
META-R is a set of R programs that performs statistical analyses to calculate BLUEs, BLUPs, genetic correlations among locations and genetic correlations between variables, broad-sense heritability, and other statistics for breeding trials are given too, in order to make boxplots...
May 7, 2019
Francisco Rodríguez; Paulino Pérez; Gustavo de los Campos; Gregorio Alvarado; Ángela Pacheco; José Crossa; Juan Burgueño, 2017, "BGLRR - Bayesian Generalized Linear Regression in R. V 2.1", https://hdl.handle.net/11529/10848, CIMMYT Research Data & Software Repository Network, V5
BGLR is a software to simplify the selection of input files and parameters to perform Bayesian Generalized Linear Regression using R (statistacal software). BGLR provides predictions, GWAS analysis and analysis of reaction norm model described in reference [1]. It allows the incl...
Oct 26, 2018
Ángela Pacheco; Francisco Rodríguez; Gregorio Alvarado; Juan Burgueño, 2017, "ADEL-R. Analysis and design of experiments with R for Windows. Version 2.0", https://hdl.handle.net/11529/10857, CIMMYT Research Data & Software Repository Network, V3
ADEL-R is a set of R programs that create and analyze experimental designs, in order to make field books and map fields when you create a design and if you analyze a design you can obtain the ANOVA table and comparison means graph. ADEL-R analyze designs like: random complete blo...
Jul 16, 2018
Makumbi, Dan; Alvarado, Gregorio; Crossa, José; Burgueño, Juan, 2018, "Program and sample data for SASHAYDIALL: A SAS Program for Hayman’s Diallel Analysis", https://hdl.handle.net/11529/10548045, CIMMYT Research Data & Software Repository Network, V4, UNF:6:qb2UIHULo/KZ3V04rm33PA== [fileUNF]
SASHAYDIALL is a code written in SAS to perform diallel analysis according to the method of Hayman (1954). The SASHAYDIALL program was written in SAS/IML and runs in SAS version 9.0 or higher. The SASHAYDIALL program requires an input ‘csv’ format data file that has replication,...
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