1 to 10 of 17 Results

Dataset / Software
Aug 29, 2019
Pacheco, Ángela; Alvarado, Gregorio; Rodríguez, Francisco; Burgueño, Juan, 2016, "BIO-R (Biodiversity analysis with R for Windows) Version 2.0", hdl:11529/10820, CIMMYT Research Data & Software Repository Network, V8
BIO-R is a set of R programs that do biodiversity analysis of molecular data, in order to calculate heterozygosity, diversity among and within groups, shannon index, number of effective allele, percent of polymorphic loci, Rogers distance, Nei distance, cluster analysis and multi... |

Dataset / Software
Aug 15, 2019
Alvarado, Gregorio; López, Marco; Vargas, Mateo; Pacheco, Ángela; Rodríguez, Francisco; Burgueño, Juan; Crossa, José, 2015, "META-R (Multi Environment Trail Analysis with R for Windows) Version 6.04", hdl:11529/10201, CIMMYT Research Data & Software Repository Network, V22
META-R is a set of R programs that performs statistical analyses to calculate BLUEs, BLUPs, genetic correlations among locations and genetic correlations between variables, broad-sense heritability, and other statistics for breeding trials are given too, in order to make boxplots... |

Dataset / Software
May 7, 2019
Francisco Rodríguez; Paulino Pérez; Gustavo de los Campos; Gregorio Alvarado; Ángela Pacheco; José Crossa; Juan Burgueño, 2017, "BGLRR - Bayesian Generalized Linear Regression in R. V 2.1", hdl:11529/10848, CIMMYT Research Data & Software Repository Network, V5
BGLR is a software to simplify the selection of input files and parameters to perform Bayesian Generalized Linear Regression using R (statistacal software). BGLR provides predictions, GWAS analysis and analysis of reaction norm model described in reference [1]. It allows the incl... |

Dataset / Software
Oct 26, 2018
Ángela Pacheco; Francisco Rodríguez; Gregorio Alvarado; Juan Burgueño, 2017, "ADEL-R. Analysis and design of experiments with R for Windows. Version 2.0", hdl:11529/10857, CIMMYT Research Data & Software Repository Network, V3
ADEL-R is a set of R programs that create and analyze experimental designs, in order to make field books and map fields when you create a design and if you analyze a design you can obtain the ANOVA table and comparison means graph. ADEL-R analyze designs like: random complete blo... |

Dataset / Software
Jul 16, 2018
Makumbi, Dan; Alvarado, Gregorio; Crossa, José; Burgueño, Juan, 2018, "Program and sample data for SASHAYDIALL: A SAS Program for Hayman’s Diallel Analysis", hdl:11529/10548045, CIMMYT Research Data & Software Repository Network, V4, UNF:6:qb2UIHULo/KZ3V04rm33PA==
SASHAYDIALL is a code written in SAS to perform diallel analysis according to the method of Hayman (1954). The SASHAYDIALL program was written in SAS/IML and runs in SAS version 9.0 or higher. The SASHAYDIALL program requires an input ‘csv’ format data file that has replication,... |

Dataset / Software
Jul 11, 2018
Ángela Pacheco; Sergio Pérez; Gregorio Alvarado; Jesús Cerón; Francisco Rodríguez; José Crossa; Juan Burgueño, 2017, "RIndSel Selection indeces for plant breeding", hdl:11529/10854, CIMMYT Research Data & Software Repository Network, V2
A genomic selection index (GSI) is a linear combination of genomic estimated breeding values that uses genomic markers to predict the net genetic merit and select parents from a nonphenotyped testing population. RIndSel is a software that calculated some different index like: Eig... |

Dataset / Software
Jul 11, 2018
Francisco Rodríguez; Paulino Pérez; Gregorio Alvarado; Ángela Pacheco; José Crossa; Juan Burgueño, 2017, "PED-R. Pedigree Matrix with R for Windows. Version 1.1", hdl:11529/10856, CIMMYT Research Data & Software Repository Network, V2
PED-R is a software to calculate easily the Pedigree matrix using R (statistical software). PED-R provides the Pedigree matrix in csv format and txt format which can be used by GAP software to show heatmaps. Also a heatmap is provided in pdf format. Another file provided is in fo... |

Dataset / Software
Jul 11, 2018
Pacheco, Ángela; Vargas, Mateo; Alvarado, Gregorio; Rodríguez, Francisco; Crossa, José; Burgueño, Juan, 2015, "GEA-R (Genotype x Environment Analysis with R for Windows) Version 4.1", hdl:11529/10203, CIMMYT Research Data & Software Repository Network, V16
In agricultural experimentation, a large number of genotypes are normally tested over a wide range of environments. The occurrence of the genotype (G) X environment (E) interaction (GEI) effect further complicates the selection of superior genoty pes for a target population of en... |

Dataset / Software
Jul 11, 2018
Francisco Rodríguez; Thanda Dhliwayo; Samuel Trachsel; Gregorio Alvarado; Ángela Pacheco; Juan Burgueño, 2017, "Eval_LxT. Evaluation of Line by Tester Experiments with R for Windows. Version 2.0", hdl:11529/10858, CIMMYT Research Data & Software Repository Network, V2
Eval_LxT is a software designed to evaluate the analyzed essays in AGD-R [1] and get the best genotypes that satisfy certain characteristics of different traits. It allows to include the pedigree information related to the codes of lines. Also its posible to identify the checks t... |

Dataset / Software
Jul 11, 2018
Ángela Pacheco; Francisco Rodríguez; Gregorio Alvarado; Mateo Vargas; Marco López; José Crossa; Juan Burgueño, 2017, "STAD-R Descriptive statistics for experimental designs", hdl:11529/10853, CIMMYT Research Data & Software Repository Network, V3
STAD-R is a set of R programs that performs descriptive statistics, in order to make boxplots and histograms. STAD-R was designed because is necessary before than the thing, check if the dataset have the same number of repetitions, blocks, genotypes, environments, if we have miss... |