CIMMYT Research Data & Software Repository Network

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CIMMYT institutional network of scientific datasets and software repositories.

Cereal Systems Initiative for South Asia (CSISA) Research Data

CIMMYT Research Data

CIMMYT Research Software

International Wheat Yield Partnership Research Data

Sustainable and Resilient Farming Systems Intensification in the Eastern Gangetic Plains (SRFSI) Research Data

Crops to End Hunger (CtEH) Data

CIMMYT Seeds of Discovery

BNI-CropSustaiN Research Data and Protocols

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11,381 to 11,390 of 12,305 Results

10CHTTY-Locations.pdf Aug 21, 2016 - International Late Yellow Hybrid Trial - ILYH1004 Adobe PDF - 29.2 KB - MD5: d513a0dd767b64979df9760d542f9d2e Locations Geographic information, planting and harvesting dates for locations where CHTTY-2010 was evaluated
11CHTTY-Combined.pdf Aug 21, 2016 - International Late Yellow Hybrid trial - ILYH1102 Adobe PDF - 77.2 KB - MD5: b96fb50c8786b6ff0d99fc78dd35c465 Combined Analysis Mean for different traits across environments - CHTTY 2011
DArTSeq_102474markers__FJ_Uchrom.txt Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions Plain Text - 2.8 MB - MD5: 870316291d67f39e74b39bc693e46cad Genotypic data Map file that can be used to visualize genotypic results in Flapjack. Please note that all markers are unmapped and their order does not reflect their actual relative positions in the wheat genome.
DArTSeq_genotypic_report_data_dictionary.txt Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions Plain Text - 2.2 KB - MD5: 945162b58c7b76b74b42e69cd70c8896 Data Dictionary A description of the columns of information and header row information present in the DArTSeq SNPs csv genotypic results file.
DArTSeq_SNPs_iranian_landrace_2440samples_102474markers.csv.zip Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions Unknown - 44.6 MB - MD5: 2dabb416363b0fcda296877b8bb08b19 Genotypic data DArtSeq SNP call data in a csv file that includes several quality parameters for the genotypic results.
DArTSeq_SNPs_iranian_landrace_2440samples_102474markers_FJ_project.zip Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions Unknown - 94.2 MB - MD5: 5fe45af05161e23182a807ef7abb58b7 Genotypic data DArtSeq SNP call data stored in a Flapjack project format to allow immediate upload to the Flapjack software for visualization and analysis
DArTSeq_SNPs_iranian_landrace_2440samples_102474markers_FJ.txt.zip Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions Unknown - 38.1 MB - MD5: 4fd41e28e678bf79ec2a73d4385be815 Genotypic data DArtSeq SNP call data in a tab-delimited text file. This can be used for uploading to Flapjack in conjunction with the map file. Please note that this matrix is inverted from the normal Flapjack format so the appropriate parameter must be changed in the Flapjack import tool.
DArTSeq_wheat_genotyping_protocol.pdf Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions Adobe PDF - 188.5 KB - MD5: 39588041c9433250f9d59f96ad81feaa Protocol
DNA extraction protocol_for genotyping_CIMMYT.pdf Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions Adobe PDF - 85.1 KB - MD5: 78cfd5d827195a021845bd676223fecc Protocol Protocol used for DNA extraction prior to genotyping
SampleIDvsGID_iranian_landrace.txt Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions Plain Text - 48.9 KB - MD5: d811c272394385a56b181e9571c4da92 Mapping file This file can be used to map between the DNA Sample ID used to identify samples in the DArTSeq genotypic results files and the GID (Germplasm ID) that is used to identify CIMMYT germplasm.

10CHTTY-Locations.pdf

Aug 21, 2016 - International Late Yellow Hybrid Trial - ILYH1004

Adobe PDF - 29.2 KB -

Locations

Geographic information, planting and harvesting dates for locations where CHTTY-2010 was evaluated

11CHTTY-Combined.pdf

Aug 21, 2016 - International Late Yellow Hybrid trial - ILYH1102

Adobe PDF - 77.2 KB -

Combined Analysis

Mean for different traits across environments - CHTTY 2011

DArTSeq_102474markers__FJ_Uchrom.txt

Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions

Plain Text - 2.8 MB -

Genotypic data

Map file that can be used to visualize genotypic results in Flapjack. Please note that all markers are unmapped and their order does not reflect their actual relative positions in the wheat genome.

DArTSeq_genotypic_report_data_dictionary.txt

Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions

Plain Text - 2.2 KB -

Data Dictionary

A description of the columns of information and header row information present in the DArTSeq SNPs csv genotypic results file.

DArTSeq_SNPs_iranian_landrace_2440samples_102474markers.csv.zip

Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions

Unknown - 44.6 MB -

Genotypic data

DArtSeq SNP call data in a csv file that includes several quality parameters for the genotypic results.

DArTSeq_SNPs_iranian_landrace_2440samples_102474markers_FJ_project.zip

Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions

Unknown - 94.2 MB -

Genotypic data

DArtSeq SNP call data stored in a Flapjack project format to allow immediate upload to the Flapjack software for visualization and analysis

DArTSeq_SNPs_iranian_landrace_2440samples_102474markers_FJ.txt.zip

Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions

Unknown - 38.1 MB -

Genotypic data

DArtSeq SNP call data in a tab-delimited text file. This can be used for uploading to Flapjack in conjunction with the map file. Please note that this matrix is inverted from the normal Flapjack format so the appropriate parameter must be changed in the Flapjack import tool.

DArTSeq_wheat_genotyping_protocol.pdf

Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions

Adobe PDF - 188.5 KB -

Protocol

DNA extraction protocol_for genotyping_CIMMYT.pdf

Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions

Adobe PDF - 85.1 KB -

Protocol

Protocol used for DNA extraction prior to genotyping

SampleIDvsGID_iranian_landrace.txt

Jul 24, 2016 - DArTseq-derived SNPs for wheat Iranian landrace accessions

Plain Text - 48.9 KB -

Mapping file

This file can be used to map between the DNA Sample ID used to identify samples in the DArTSeq genotypic results files and the GID (Germplasm ID) that is used to identify CIMMYT germplasm.

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