CIMMYT Research Software

Free, open access repository of research software produced and developed by CIMMYT scientists.

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51 to 60 of 78 Results

GEA-R (Genotype x Environment Analysis with R for Windows) Version 4.1 Jul 11, 2018 Pacheco-Gil, Rosa Ángela; Vargas, Mateo; Alvarado, Gregorio; Rodríguez, Francisco; Crossa, Jose; Burgueño, Juan, 2015, "GEA-R (Genotype x Environment Analysis with R for Windows) Version 4.1", https://hdl.handle.net/11529/10203, CIMMYT Research Data & Software Repository Network, V16 In agricultural experimentation, a large number of genotypes are normally tested over a wide range of environments. The occurrence of the genotype (G) X environment (E) interaction (GEI) effect further complicates the selection of superior genoty pes for a target population of en...
GEA-R_v4.1_BASE_setup.exe Jul 11, 2018 - GEA-R (Genotype x Environment Analysis with R for Windows) Version 4.1 Windows Executable - 178.9 MB - MD5: e9d1d67026fc2ec94d68e3b517593de9
Eval_LxT. Evaluation of Line by Tester Experiments with R for Windows. Version 2.0 Jul 11, 2018 Rodríguez, Francisco; Dhliwayo, Thanda; Trachsel, Samuel; Alvarado, Gregorio; Pacheco-Gil, Rosa Ángela; Burgueño, Juan, 2017, "Eval_LxT. Evaluation of Line by Tester Experiments with R for Windows. Version 2.0", https://hdl.handle.net/11529/10858, CIMMYT Research Data & Software Repository Network, V2 Eval_LxT is a software designed to evaluate the analyzed essays in AGD-R [1] and get the best genotypes that satisfy certain characteristics of different traits. It allows to include the pedigree information related to the codes of lines. Also its posible to identify the checks t...
Eval_LxT_v2.0_BASE_setup.exe Jul 11, 2018 - Eval_LxT. Evaluation of Line by Tester Experiments with R for Windows. Version 2.0 Windows Executable - 231.3 MB - MD5: db0e9751691f5b054d5ceae7815ba3c9
README_Eval_LxT.txt Jul 11, 2018 - Eval_LxT. Evaluation of Line by Tester Experiments with R for Windows. Version 2.0 Plain Text - 3.5 KB - MD5: 4b829111a69647c49e65f84a7be784a4
README_AGD-R.txt Jul 11, 2018 - AGD-R (Analysis of Genetic Designs with R for Windows) Version 5.0 Plain Text - 3.9 KB - MD5: 8fbbbcbbe9a656c932d878750b080ed8
README_BGLR-R.txt Jul 11, 2018 - BGLRR - Bayesian Generalized Linear Regression in R. V 2.1 Plain Text - 3.7 KB - MD5: 3e8e22f64b1e4600fe17e1b6694c223a
MAIZEDIALLEL-2LOCS-2YEARS.tab May 5, 2018 - Program and sample data for SASHAYDIALL: A SAS Program for Hayman’s Diallel Analysis Tabular Data - 10.3 KB - 6 Variables, 728 Observations - UNF:6:qb2UIHULo/KZ3V04rm33PA== Sample Dataset
An informational view of accession rarity and allele specificity in germplasm banks for management and conservation Feb 14, 2018 Reyes-Valdés, M Humberto; Burgueño, Juan; Martínez, Octavio; Sansaloni, Carolina Paola, 2018, "An informational view of accession rarity and allele specificity in germplasm banks for management and conservation", https://hdl.handle.net/11529/10547952, CIMMYT Research Data & Software Repository Network, V2, UNF:6:v+RWYoZQ/W6oh+hfVGd6uQ== [fileUNF] Repository of the data set used in the paper "An informational view of accession rarity and allele specificity in germplasm banks for management and conservation" M. Humberto Reyes-Valdés 1, Juan Burgueño-Ferreira 2, Octavio Martínez 3, Carolina Paola Sansaloni 2. 1 Department of...
AllDataHexaploid.bin Feb 14, 2018 - An informational view of accession rarity and allele specificity in germplasm banks for management and conservation R Data - 81.7 MB - MD5: ffec764128374e86a73b31e57a33a533 AllDataHexaploid.bin. A table in RData format, readable by R through the function load. It has a dimension 41052 x 7987. The column allele_id is the SNP allele id, and the remaining 7986 columns are hexaploid wheat accessions. The numbers in the cells are allele frequencies. Th...

GEA-R (Genotype x Environment Analysis with R for Windows) Version 4.1

Jul 11, 2018

Pacheco-Gil, Rosa Ángela; Vargas, Mateo; Alvarado, Gregorio; Rodríguez, Francisco; Crossa, Jose; Burgueño, Juan, 2015, "GEA-R (Genotype x Environment Analysis with R for Windows) Version 4.1", https://hdl.handle.net/11529/10203, CIMMYT Research Data & Software Repository Network, V16

In agricultural experimentation, a large number of genotypes are normally tested over a wide range of environments. The occurrence of the genotype (G) X environment (E) interaction (GEI) effect further complicates the selection of superior genoty pes for a target population of en...

GEA-R_v4.1_BASE_setup.exe

Jul 11, 2018 - GEA-R (Genotype x Environment Analysis with R for Windows) Version 4.1

Windows Executable - 178.9 MB -

Eval_LxT. Evaluation of Line by Tester Experiments with R for Windows. Version 2.0

Jul 11, 2018

Rodríguez, Francisco; Dhliwayo, Thanda; Trachsel, Samuel; Alvarado, Gregorio; Pacheco-Gil, Rosa Ángela; Burgueño, Juan, 2017, "Eval_LxT. Evaluation of Line by Tester Experiments with R for Windows. Version 2.0", https://hdl.handle.net/11529/10858, CIMMYT Research Data & Software Repository Network, V2

Eval_LxT is a software designed to evaluate the analyzed essays in AGD-R [1] and get the best genotypes that satisfy certain characteristics of different traits. It allows to include the pedigree information related to the codes of lines. Also its posible to identify the checks t...

Eval_LxT_v2.0_BASE_setup.exe

Jul 11, 2018 - Eval_LxT. Evaluation of Line by Tester Experiments with R for Windows. Version 2.0

Windows Executable - 231.3 MB -

README_Eval_LxT.txt

Jul 11, 2018 - Eval_LxT. Evaluation of Line by Tester Experiments with R for Windows. Version 2.0

Plain Text - 3.5 KB -

README_AGD-R.txt

Jul 11, 2018 - AGD-R (Analysis of Genetic Designs with R for Windows) Version 5.0

Plain Text - 3.9 KB -

README_BGLR-R.txt

Jul 11, 2018 - BGLRR - Bayesian Generalized Linear Regression in R. V 2.1

Plain Text - 3.7 KB -

MAIZEDIALLEL-2LOCS-2YEARS.tab

May 5, 2018 - Program and sample data for SASHAYDIALL: A SAS Program for Hayman’s Diallel Analysis

Tabular Data - 10.3 KB - 6 Variables, 728 Observations -

Sample Dataset

An informational view of accession rarity and allele specificity in germplasm banks for management and conservation

Feb 14, 2018

Reyes-Valdés, M Humberto; Burgueño, Juan; Martínez, Octavio; Sansaloni, Carolina Paola, 2018, "An informational view of accession rarity and allele specificity in germplasm banks for management and conservation", https://hdl.handle.net/11529/10547952, CIMMYT Research Data & Software Repository Network, V2, UNF:6:v+RWYoZQ/W6oh+hfVGd6uQ== [fileUNF]

Repository of the data set used in the paper "An informational view of accession rarity and allele specificity in germplasm banks for management and conservation" M. Humberto Reyes-Valdés 1, Juan Burgueño-Ferreira 2, Octavio Martínez 3, Carolina Paola Sansaloni 2. 1 Department of...

AllDataHexaploid.bin

Feb 14, 2018 - An informational view of accession rarity and allele specificity in germplasm banks for management and conservation

R Data - 81.7 MB -

AllDataHexaploid.bin. A table in RData format, readable by R through the function *load*. It has a dimension 41052 x 7987. The column allele_id is the SNP allele id, and the remaining 7986 columns are hexaploid wheat accessions. The numbers in the cells are allele frequencies. Th...

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