CIMMYT Research Data

Free, open access repository of research studies developed by CIMMYT scientists.

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651 to 660 of 10,602 Results

Replication Data for: Combination of Linkage and Association Mapping with Genomic Prediction to Infer QTL Regions Associated with Gray Leaf Spot and Northern Corn Leaf Blight Resistance in Tropical Maize Nov 1, 2023 Gowda, Manje; Beyene, Yoseph; Suresh L M; Berger, Dave, 2023, "Replication Data for: Combination of Linkage and Association Mapping with Genomic Prediction to Infer QTL Regions Associated with Gray Leaf Spot and Northern Corn Leaf Blight Resistance in Tropical Maize", https://hdl.handle.net/11529/10548956, CIMMYT Research Data & Software Repository Network, V1 Gray Leaf Spot (GLS) and Northern Corn Leaf Blight (NCLB) are two pathogens with high genetic diversity that can reduce grain yield in infected maize plants.To identify population-based quantitative trait loci (QTL) for GLS and NCLB resistance, a biparental population and an asso...
BLUEs_DHpop_GWAS_paneldata.xlsx Nov 1, 2023 - Replication Data for: Combination of Linkage and Association Mapping with Genomic Prediction to Infer QTL Regions Associated with Gray Leaf Spot and Northern Corn Leaf Blight Resistance in Tropical Maize MS Excel Spreadsheet - 965.8 KB - MD5: 1f96a5299de636025fc5345f17365093 DH population - GLS and NCLB BLUEs data and marker data. GWAS panel BLUEs phenotypic data for GLS and NCLB across three locations
GBS_239_F6_lines_230743SNPs.hmp.txt Nov 1, 2023 - Replication Data for: Combination of Linkage and Association Mapping with Genomic Prediction to Infer QTL Regions Associated with Gray Leaf Spot and Northern Corn Leaf Blight Resistance in Tropical Maize Plain Text - 168.4 MB - MD5: e4663092c73c2d0fba1b028287197265 GBS data after filtering it with MAF >0.05 and Missing values of <10%, for GWAS panel of 239 lines used for GLS and NCLB data analyses
Genotypic data (DArTAG panel 2) for the IBWSN and SAWSN Oct 25, 2023 Dreisigacker, Susanne, 2023, "Genotypic data (DArTAG panel 2) for the IBWSN and SAWSN", https://hdl.handle.net/11529/10548931, CIMMYT Research Data & Software Repository Network, V2 DArTAG panel 2 validation data on 1454 CIMMYT spring bread wheat elite lines included in the 53, 54 and 55IWBWSN and 38, 39 and 40 SAWSN. DArTAG panel 2 consists of 3897 selected SNPs.
DArTAG-DW23-8539.7z Oct 25, 2023 - Genotypic data (DArTAG panel 2) for the IBWSN and SAWSN 7Z Archive - 4.9 MB - MD5: 906d908f05481cf25b814729e02ad51b DataGenotypic data
Replication Data for: Genome-wide association study reveals major loci for resistance to septoria tritici blotch in a Tunisian durum wheat collection Oct 23, 2023 Ouaja, Maroua; Ghimire, Bikash; Bahri, Bochra A; Maher, Medini; Sahbi, Ferjaoui; Udupa, Sripada; Hamza, Sonia, 2023, "Replication Data for: Genome-wide association study reveals major loci for resistance to septoria tritici blotch in a Tunisian durum wheat collection", https://hdl.handle.net/11529/10548954, CIMMYT Research Data & Software Repository Network, V2 Genome-wide association study was performed in a Tunisian durum wheat collection. The collection was genotyped with the wheat 90K Illumina array and phenotyped for seportia tritici blotch.
Genotypic_data_202310_23_ver2.xlsx.gz Oct 23, 2023 - Replication Data for: Genome-wide association study reveals major loci for resistance to septoria tritici blotch in a Tunisian durum wheat collection Gzip Archive - 5.3 MB - MD5: 219f4ccda8623c04b67ff59313f49dd2 DataGenotypic data
Replication Data for: Discovery of Genomic Regions Associated with Grain Yield and Agronomic Traits in Bi-parental Populations of Maize (Zea mays. L) under Optimum and Low Nitrogen Conditions Oct 20, 2023 Kimutai, Collins; Ndlovu, Noel; Chaikam, Vijay; Tadesse Ertiro, Berhanu; Das, Biswanath; Beyene, Yoseph; Kiplagat, Oliver; Spillane, Charles; Prasanna, B.M.; Gowda, Manje, 2023, "Replication Data for: Discovery of Genomic Regions Associated with Grain Yield and Agronomic Traits in Bi-parental Populations of Maize (Zea mays. L) under Optimum and Low Nitrogen Conditions", https://hdl.handle.net/11529/10548940, CIMMYT Research Data & Software Repository Network, V1 Low soil nitrogen stress can contribute to food insecurity, malnutrition, and rural poverty in maize-dependent smallholder communities of sub-Saharan Africa (SSA). Enhanced selection for improved varieites may result from a better understanding of the genomic regions associated w...
F3pops_Phenodata_SNPs.xlsx Oct 20, 2023 - Replication Data for: Discovery of Genomic Regions Associated with Grain Yield and Agronomic Traits in Bi-parental Populations of Maize (Zea mays. L) under Optimum and Low Nitrogen Conditions MS Excel Spreadsheet - 1.4 MB - MD5: d7894cf205dd731e3519677c70ea8999 F3 populations across locations BLUPs and their mid-density marker data
Replication Data for: Study of Post-flowering stalk rot (PFSR) pathogen species variation and possible shifts across selected maize agro-ecologies in South Asia Oct 20, 2023 Rashid, Zerka; Babu, Veerendra; Pharene, Bharat; Kaur, Harleen; Anwar, Md. Arshad; Shende, Vivek; Aggarwal, Sumit; Kachapur, Rajshekhar; Harlapur, Sharanappa I.; Singh, Pradeep Kumar; Sunder Sharma, Shyam; Nair, Sudha Krishnan, 2023, "Replication Data for: Study of Post-flowering stalk rot (PFSR) pathogen species variation and possible shifts across selected maize agro-ecologies in South Asia", https://hdl.handle.net/11529/10548955, CIMMYT Research Data & Software Repository Network, V1 Maize post-flowering stalk rots (PFSR) are caused by at least six genera of fungal pathogens. They generally occur as a complex, along with secondary colonizers. PFSR are reported from all major maize growing ecologies and are expected to be exacerbated by the changing climates i...

Replication Data for: Combination of Linkage and Association Mapping with Genomic Prediction to Infer QTL Regions Associated with Gray Leaf Spot and Northern Corn Leaf Blight Resistance in Tropical Maize

Nov 1, 2023

Gowda, Manje; Beyene, Yoseph; Suresh L M; Berger, Dave, 2023, "Replication Data for: Combination of Linkage and Association Mapping with Genomic Prediction to Infer QTL Regions Associated with Gray Leaf Spot and Northern Corn Leaf Blight Resistance in Tropical Maize", https://hdl.handle.net/11529/10548956, CIMMYT Research Data & Software Repository Network, V1

Gray Leaf Spot (GLS) and Northern Corn Leaf Blight (NCLB) are two pathogens with high genetic diversity that can reduce grain yield in infected maize plants.To identify population-based quantitative trait loci (QTL) for GLS and NCLB resistance, a biparental population and an asso...

BLUEs_DHpop_GWAS_paneldata.xlsx

Nov 1, 2023 - Replication Data for: Combination of Linkage and Association Mapping with Genomic Prediction to Infer QTL Regions Associated with Gray Leaf Spot and Northern Corn Leaf Blight Resistance in Tropical Maize

MS Excel Spreadsheet - 965.8 KB -

DH population - GLS and NCLB BLUEs data and marker data. GWAS panel BLUEs phenotypic data for GLS and NCLB across three locations

GBS_239_F6_lines_230743SNPs.hmp.txt

Plain Text - 168.4 MB -

GBS data after filtering it with MAF >0.05 and Missing values of <10%, for GWAS panel of 239 lines used for GLS and NCLB data analyses

Genotypic data (DArTAG panel 2) for the IBWSN and SAWSN

Oct 25, 2023

Dreisigacker, Susanne, 2023, "Genotypic data (DArTAG panel 2) for the IBWSN and SAWSN", https://hdl.handle.net/11529/10548931, CIMMYT Research Data & Software Repository Network, V2

DArTAG panel 2 validation data on 1454 CIMMYT spring bread wheat elite lines included in the 53, 54 and 55IWBWSN and 38, 39 and 40 SAWSN. DArTAG panel 2 consists of 3897 selected SNPs.

DArTAG-DW23-8539.7z

Oct 25, 2023 - Genotypic data (DArTAG panel 2) for the IBWSN and SAWSN

7Z Archive - 4.9 MB -

DataGenotypic data

Replication Data for: Genome-wide association study reveals major loci for resistance to septoria tritici blotch in a Tunisian durum wheat collection

Oct 23, 2023

Ouaja, Maroua; Ghimire, Bikash; Bahri, Bochra A; Maher, Medini; Sahbi, Ferjaoui; Udupa, Sripada; Hamza, Sonia, 2023, "Replication Data for: Genome-wide association study reveals major loci for resistance to septoria tritici blotch in a Tunisian durum wheat collection", https://hdl.handle.net/11529/10548954, CIMMYT Research Data & Software Repository Network, V2

Genome-wide association study was performed in a Tunisian durum wheat collection. The collection was genotyped with the wheat 90K Illumina array and phenotyped for seportia tritici blotch.

Genotypic_data_202310_23_ver2.xlsx.gz

Oct 23, 2023 - Replication Data for: Genome-wide association study reveals major loci for resistance to septoria tritici blotch in a Tunisian durum wheat collection

Gzip Archive - 5.3 MB -

DataGenotypic data

Replication Data for: Discovery of Genomic Regions Associated with Grain Yield and Agronomic Traits in Bi-parental Populations of Maize (Zea mays. L) under Optimum and Low Nitrogen Conditions

Oct 20, 2023

Kimutai, Collins; Ndlovu, Noel; Chaikam, Vijay; Tadesse Ertiro, Berhanu; Das, Biswanath; Beyene, Yoseph; Kiplagat, Oliver; Spillane, Charles; Prasanna, B.M.; Gowda, Manje, 2023, "Replication Data for: Discovery of Genomic Regions Associated with Grain Yield and Agronomic Traits in Bi-parental Populations of Maize (Zea mays. L) under Optimum and Low Nitrogen Conditions", https://hdl.handle.net/11529/10548940, CIMMYT Research Data & Software Repository Network, V1

Low soil nitrogen stress can contribute to food insecurity, malnutrition, and rural poverty in maize-dependent smallholder communities of sub-Saharan Africa (SSA). Enhanced selection for improved varieites may result from a better understanding of the genomic regions associated w...

F3pops_Phenodata_SNPs.xlsx

Oct 20, 2023 - Replication Data for: Discovery of Genomic Regions Associated with Grain Yield and Agronomic Traits in Bi-parental Populations of Maize (Zea mays. L) under Optimum and Low Nitrogen Conditions

MS Excel Spreadsheet - 1.4 MB -

F3 populations across locations BLUPs and their mid-density marker data

Replication Data for: Study of Post-flowering stalk rot (PFSR) pathogen species variation and possible shifts across selected maize agro-ecologies in South Asia

Oct 20, 2023

Rashid, Zerka; Babu, Veerendra; Pharene, Bharat; Kaur, Harleen; Anwar, Md. Arshad; Shende, Vivek; Aggarwal, Sumit; Kachapur, Rajshekhar; Harlapur, Sharanappa I.; Singh, Pradeep Kumar; Sunder Sharma, Shyam; Nair, Sudha Krishnan, 2023, "Replication Data for: Study of Post-flowering stalk rot (PFSR) pathogen species variation and possible shifts across selected maize agro-ecologies in South Asia", https://hdl.handle.net/11529/10548955, CIMMYT Research Data & Software Repository Network, V1

Maize post-flowering stalk rots (PFSR) are caused by at least six genera of fungal pathogens. They generally occur as a complex, along with secondary colonizers. PFSR are reported from all major maize growing ecologies and are expected to be exacerbated by the changing climates i...

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