CIMMYT Research Data & Software Repository Network

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1,361 to 1,370 of 1,516 Results

Flapjack_memory_allocation_increase.pdf Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Adobe PDF - 226.1 KB - MD5: fc3714ed31498c14e6691cd3ea06df07 Protocol The files released with this study are so large that they cannot be loaded into Flapjack using the default memory allocation but this protocol describes how to increase the memory available to Flapjack.
md5sum_hash.txt Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Plain Text - 514 B - MD5: 32e3390296025fa11580a62efe3be6c7 Checksum file This file can be used to verify the integrity of the files once they have been downloaded and unzipped.
SampleIDvsGID_45610samples.txt Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014 Plain Text - 931.1 KB - MD5: 565a06647fcf7ab6c5616df9a96666bd Mapping file This file can be used to map between the DNA Sample ID used to identify samples in the DArTSeq genotypic results files and the GID (Germplasm ID) that is used to identify CIMMYT germplasm.
Complete_CML1-538_unimputed_genotypic_results.hmp.txt Jul 13, 2016 - CIMMYT Maize Line genotypic profiles generated through genotyping-by-sequencing Plain Text - 1.0 GB - MD5: 3752de63fffdff9f67e105274a56a1b2 Genotypic data Genotypic results for unimputed SNPs are presented in hapmap format for 538 CML lines and 6 temperate US inbred lines.
Filtered_CML1-538_unimputed_genotypic_results.hmp.txt Jul 13, 2016 - CIMMYT Maize Line genotypic profiles generated through genotyping-by-sequencing Plain Text - 392.4 MB - MD5: 6f2662b61f6762ed2d35db7c781187a7 Genotypic data A filtered subset of 362008 of the unimputed SNPs are presented in hapmap format for 538 CML lines and 6 temperate US inbred lines.
CML-DArTseq_data.hmp.zip Jun 15, 2016 - CIMMYT Maize Line (CML) SNPs Generated Using DArTseq Genotyping Unknown - 3.1 MB - MD5: 566da82b9bfa82b622d84340e93879d2 Genotypic data Single nucleotide polymorphisms (SNPs) for 555 CML lines generated through DArTseq-based genotyping. Please note that the position given in the file for each marker describes the position where the first nucleotide of the clone sequence aligns to the reference genome.
CML_DArTseq_data_ Readme.txt Jun 15, 2016 - CIMMYT Maize Line (CML) SNPs Generated Using DArTseq Genotyping Plain Text - 574 B - MD5: f2ebb35cbb2bc79f711bdabf4bcb927b README Information about the genotypic data format and the reference sequence used to provide chromosome and position information for the markers.
caracteristicas_basicas.csv May 21, 2016 - KDSmart: Training Materials and Sample Files Plain Text - 1.1 KB - MD5: abf2f00959be4416c723d4103e00f7be 2. General templates Estas características básicas son un formato con un ejemplo de los tipos de características que se pueden utilizar con KDSmart. Pero cualquier usuario puede crear sus propias características con sus propios nombres.
ensayo_basico.csv May 21, 2016 - KDSmart: Training Materials and Sample Files Plain Text - 416 B - MD5: 22caa86e2c34cb3f3ebb688bea4f84b4 2. General templates Formato básico de un ensayo en KDSmart. Los nombres de las características de este archivo deben de ser iguales a los nombres del archivo de “Traits”.
ensayo_minimo.csv May 21, 2016 - KDSmart: Training Materials and Sample Files Plain Text - 127 B - MD5: 8f10860d6d5df94a51a28d5c9ac2b9f2 2. General templates Formato mínimo de un ensayo en KDSmart.

Flapjack_memory_allocation_increase.pdf

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Adobe PDF - 226.1 KB -

Protocol

The files released with this study are so large that they cannot be loaded into Flapjack using the default memory allocation but this protocol describes how to increase the memory available to Flapjack.

md5sum_hash.txt

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Plain Text - 514 B -

Checksum file

This file can be used to verify the integrity of the files once they have been downloaded and unzipped.

SampleIDvsGID_45610samples.txt

Jul 24, 2016 - Seeds of Discovery - MasAgro Biodiversidad Wheat DArTseq-Derived SNP Data: Beta Recall Results From 2011-2014

Plain Text - 931.1 KB -

Mapping file

This file can be used to map between the DNA Sample ID used to identify samples in the DArTSeq genotypic results files and the GID (Germplasm ID) that is used to identify CIMMYT germplasm.

Complete_CML1-538_unimputed_genotypic_results.hmp.txt

Jul 13, 2016 - CIMMYT Maize Line genotypic profiles generated through genotyping-by-sequencing

Plain Text - 1.0 GB -

Genotypic data

Genotypic results for unimputed SNPs are presented in hapmap format for 538 CML lines and 6 temperate US inbred lines.

Filtered_CML1-538_unimputed_genotypic_results.hmp.txt

Jul 13, 2016 - CIMMYT Maize Line genotypic profiles generated through genotyping-by-sequencing

Plain Text - 392.4 MB -

Genotypic data

A filtered subset of 362008 of the unimputed SNPs are presented in hapmap format for 538 CML lines and 6 temperate US inbred lines.

CML-DArTseq_data.hmp.zip

Jun 15, 2016 - CIMMYT Maize Line (CML) SNPs Generated Using DArTseq Genotyping

Unknown - 3.1 MB -

Genotypic data

Single nucleotide polymorphisms (SNPs) for 555 CML lines generated through DArTseq-based genotyping. Please note that the position given in the file for each marker describes the position where the first nucleotide of the clone sequence aligns to the reference genome.

CML_DArTseq_data_ Readme.txt

Jun 15, 2016 - CIMMYT Maize Line (CML) SNPs Generated Using DArTseq Genotyping

Plain Text - 574 B -

README

Information about the genotypic data format and the reference sequence used to provide chromosome and position information for the markers.

caracteristicas_basicas.csv

May 21, 2016 - KDSmart: Training Materials and Sample Files

Plain Text - 1.1 KB -

2. General templates

Estas características básicas son un formato con un ejemplo de los tipos de características que se pueden utilizar con KDSmart. Pero cualquier usuario puede crear sus propias características con sus propios nombres.

ensayo_basico.csv

May 21, 2016 - KDSmart: Training Materials and Sample Files

Plain Text - 416 B -

2. General templates

Formato básico de un ensayo en KDSmart. Los nombres de las características de este archivo deben de ser iguales a los nombres del archivo de “Traits”.

ensayo_minimo.csv

May 21, 2016 - KDSmart: Training Materials and Sample Files

Plain Text - 127 B -

2. General templates

Formato mínimo de un ensayo en KDSmart.

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