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1 to 10 of 11 Results
Dataset / Software
Sep 21, 2018 - CIMMYT Research Data
Basnet, Bhoja Raj; Crossa, Jose; Pérez-Rodríguez, Paulino; Manes, Yann; Singh, Ravi ; Rosyara, Umesh; Camarillo-Castillo, Fatima; Murua, Mercedes, 2018, "Supplemental data for hybrid wheat prediction using genomic, pedigree and environmental covariables interaction models", hdl:11529/10548129, CIMMYT Research Data & Software Repository Network, V1
Genomic prediction of hybrids unobserved in field evaluations is crucial. In this study, we used genomic G×E models for hybrid prediction, where similarity between lines was assessed by pedigree and molecular markers, and similarity between environments was accounted for by envir...
Dataset / Software
Sep 28, 2018 - CIMMYT Research Data
Montesinos-López, Osval A ; Montesinos-López, Abelardo; Crossa, Jose; Gianola, Daniel ; Hernández-Suárez, Carlos M.; Martín-Vallejo, Javier, 2018, "Supplemental data for multi-trait, multi-environment deep learning modeling for genomic-enabled prediction of plant traits", hdl:11529/10548134, CIMMYT Research Data & Software Repository Network, V1
This study provides supplemental data to support an investigation of the power of multi-trait deep learning (MTDL) models in terms of genomic-enabled prediction accuracy.
Dataset / Software
Oct 26, 2018 - CIMMYT Research Data
Montesinos-López, Osval A ; Montesinos-López, Abelardo; Crossa, Jose; Cuevas, Jaime; Montesinos-López, José Cricelio; Gutiérrez, Zitlalli Salas; Lillemo, Morten; Juliana, Philomin; Singh, Ravi, 2018, "A Bayesian genomic multi-output regressor stacking model for predicting multi-trait multi-environment plant breeding data", hdl:11529/10548141, CIMMYT Research Data & Software Repository Network, V1
A new statistical model is presented for genomic prediction on maize and wheat data comprising multi-trait, multi-environment data.
Dataset / Software
Jul 12, 2019 - CIMMYT Research Data
Howard, Reka; Gianola, Daniel; Montesinos-López, Osval; Juliana, Philomin; Singh, Ravi; Poland, Jesse; Shrestha, Sandesh; Perez-Rodriguez, Paulino; Crossa, Jose; Jarquin, Diego, 2019, "Replication Data for: Joint use of genome, pedigree and their interaction with environment for predicting the performance of wheat lines in new environments", hdl:11529/10548169, CIMMYT Research Data & Software Repository Network, V3
In this study, we evaluated genome-based prediction using 35,403 wheat lines from the Global Wheat Breeding Program of the International Maize and Wheat Improvement Center (CIMMYT). We implemented eight statistical models that included genome-wide molecular marker and pedigree in...
Dataset / Software
Jul 18, 2019 - CIMMYT Research Data
Cuevas, Jaime; Montesinos-López, Osval A; Juliana, Philomin; Pérez-Rodríguez, Paulino; Burgueño, Juan; Guzman, Carlos; Montesinos-López, Abelardo; Crossa, Jose, 2019, "Deep kernel of genomic and near infrared predictions in multi-environment breeding trials", hdl:11529/10548180, CIMMYT Research Data & Software Repository Network, V4
In genomic prediction deep learning artificial neural network are part of machine learning methods that incorporate parametric, non-parametric and semi-parametric statistical models. Kernel methods are seeing more flexible, and easier to interpret than neural networks. Kernel met...
Dataset / Software
Aug 15, 2019 - CIMMYT Research Data
Crossa, Jose; Martini, Johannes; Gianola, Daniel; Pérez-Rodríguez, Paulino; Burgueño, Juan; Singh, Ravi; Juliana, Philomin; Montesinos-López, Osval; Cuevas, Jaime, 2019, "Deep kernel and deep learning for genomic-based prediction", hdl:11529/10548273, CIMMYT Research Data & Software Repository Network, V1
Deep learning (DL) is a promising method in the context of genomic prediction for selecting individuals early in time without measuring their phenotypes. iI this paper we compare the performance in terms of genome-based prediction of the DL method, deep kernel (arc-cosine kernel,...
Dataset / Software
Apr 11, 2020 - CIMMYT Research Data
Puhl, Laura E; Crossa, Jose; Sebastian, Munilla; Cantet, R. J. C., 2020, "Additive genetic variance and covariance between relatives in wheat crosses with variable parental ploidy levels", hdl:11529/10548407, CIMMYT Research Data & Software Repository Network, V2
Synthetic hexaploid wheat was developed and used in breeding to introduce new genetic diversity into bread wheat, through interspecific hybridization of T. tauschii (diploid) and durum wheat T. turgidum (tetraploid) to produce synthetic derivatives. Therefore, one may infer that...
Dataset / Software
May 2, 2020 - CIMMYT Research Data
Villar-Hernández, Bartolo de Jesús; Crossa, Jose; Pérez-Elizalde, Sergio; García-Calvillo, Irma Delia; Toledo, Fernando; Perez-Rodriguez, Paulino, 2020, "Replication Data for: Multi-trait Bayesian decision for parental selection", hdl:11529/10548420, CIMMYT Research Data & Software Repository Network, V1
The files included in this study contains the data used with three promising multivariate loss functions: Kullback-Leibler (KL); the Energy Score; and the Multivariate Asymmetric Loss (MALF); to select the best performing parents for the next breeding cycle in two extensive real...
Dataset / Software
May 11, 2020 - CIMMYT Research Data
Ibba, Maria Itria; Crossa, Jose; Montesinos-López, Osval A.; Montesinos-López, Abelardo; Juliana, Philomin; Guzman, Carlos; Dolorean, Emily; Dreisigacker, Susanne ; Poland, Jesse, 2020, "Replication Data for: Genome-based prediction of multiple wheat quality traits in multiple years", hdl:11529/10548423, CIMMYT Research Data & Software Repository Network, V1
The use of genomic prediction could greatly help to increase the efficiency of selecting for wheat quality traits by reducing the cost and time required for this analysis. This study contains data used to evaluate the prediction performances of 13 wheat quality traits under two m...
Dataset / Software
May 24, 2020 - CIMMYT Research Data
Cuevas, Jaime; Montesinos-López, Osval A.; Martini, Johannes; Pérez-Rodríguez, Paulino; Lillemo, Morten; Crossa, Jose, 2020, "Replication Data for: Approximate kernels for large data sets In genome-based prediction", hdl:11529/10548425, CIMMYT Research Data & Software Repository Network, V1
The rapid development of molecular markers and sequencing technologies has made it possible to use genomic selection (GS) and genomic prediction (GP) in animal and plant breeding. However, computational difficulties arise when the number of observations is large. This five datase...
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