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1 to 10 of 17 Results
Dataset / Software
Dec 15, 2017
Francisco Rodríguez; Gregorio Alvarado; Ángela Pacheco; Juan Burgueño, 2017, "ACBD-R. Augmented Complete Block Design with R for Windows. Version 3.0", hdl:11529/10855, CIMMYT Research Data & Software Repository Network, V4
ACBD-R is a software to simplify the creation and analysis of augmented complete block designs using R (statistical software). ACBD-R provides an interface to set easily the experimental parameters to create a new augmented complete block design. ACBD-R also provides an interface...
Dataset / Software
Sep 26, 2017
Pacheco, Ángela; Alvarado, Gregorio; Rodríguez, Francisco; Burgueño, Juan, 2016, "BIO-R (Biodiversity analysis with R for Windows) Version 1.0.1", hdl:11529/10820, CIMMYT Research Data & Software Repository Network, V6
BIO-R is a set of R programs that do biodiversity analysis of molecular data, in order to calculate heterozygosity, diversity among and within groups, shannon index, number of effective allele, percent of polymorphic loci, Rogers distance, Nei distance, cluster analysis and multi...
Dataset / Software
Jun 27, 2017
Fernando Aguate; Samuel Trachsel; Lorena González-Pérez; Juan Burgueño; José Crossa; Mónica Balzarini; David Gouache; Matthieu Bogard; Gustavo de los Campos, 2017, "Use of High-Resolution Image Data Outperforms Vegetation Indices in Prediction of Maize Yield: Supplementary Methods", hdl:11529/10972, CIMMYT Research Data & Software Repository Network, V1
This is the supplementary methods of "Use of High-Resolution Image Data Outperforms Vegetation Indices in Prediction of Maize Yield" published in Crop Science · May 2017, DOI: 10.2135/cropsci2017.01.0007. It includes the raw data in R format and the R-code for the analysis.
Dataset / Software
Jun 7, 2017
Alvarado, Gregorio; López, Marco; Vargas, Mateo; Pacheco, Ángela; Rodríguez, Francisco; Burgueño, Juan; Crossa, José, 2015, "META-R (Multi Environment Trail Analysis with R for Windows) Version 6.01", hdl:11529/10201, CIMMYT Research Data & Software Repository Network, V20
META-R is a set of R programs that performs statistical analyses to calculate BLUEs, BLUPs, genetic correlations among locations and genetic correlations between variables, broad-sense heritability, and other statistics for breeding trials are given too, in order to make boxplots...
Dataset / Software
Feb 15, 2017
Rodríguez, Francisco; Alvarado, Gregorio; Pacheco, Ángela; Crossa, José; Burgueño, Juan, 2015, "AGD-R (Analysis of Genetic Designs with R for Windows) Version 4.0", hdl:11529/10202, CIMMYT Research Data & Software Repository Network, V12
A major objective of biometrical genetics is to explore the nature of gene action in determining quantitative traits. This also includes determination of the number of major genetic factors or genes responsible for the traits. Diallel Mating Designs have been designed to deal wit...
Dataset / Software
Jan 17, 2017
Francisco Rodríguez; Thanda Dhliwayo; Samuel Trachsel; Gregorio Alvarado; Ángela Pacheco; Juan Burgueño, 2017, "Eval_LxT. Evaluation of Line by Tester Experiments with R for Windows. Version 1.0", hdl:11529/10858, CIMMYT Research Data & Software Repository Network, V1
Eval_LxT is a software designed to evaluate the analyzed essays in AGD-R [1] and get the best genotypes that satisfy certain characteristics of different traits. It allows to include the pedigree information related to the codes of lines. Also its posible to identify the checks t...
Dataset / Software
Jan 17, 2017
Ángela Pacheco; Francisco Rodríguez; Gregorio Alvarado; Juan Burgueño, 2017, "ADEL-R. Analysis and design of experiments with R for Windows. Version 1.0", hdl:11529/10857, CIMMYT Research Data & Software Repository Network, V1
ADEL-R is a set of R programs that create and analyze experimental designs, in order to make field books and map fields when you create a design and if you analyze a design you can obtain the ANOVA table and comparison means graph. ADEL-R analyze designs like: random complete blo...
Dataset / Software
Jan 17, 2017
Francisco Rodríguez; Paulino Pérez; Gregorio Alvarado; Ángela Pacheco; José Crossa; Juan Burgueño, 2017, "PED-R. Pedigree Matrix with R for Windows. Version 1.0", hdl:11529/10856, CIMMYT Research Data & Software Repository Network, V1
PED-R is a software to calculate easily the Pedigree matrix using R (statistical software). PED-R provides the Pedigree matrix in csv format and txt format which can be used by GAP software to show heatmaps. Also a heatmap is provided in pdf format. Another file provided is in fo...
Dataset / Software
Jan 17, 2017
Ángela Pacheco; Francisco Rodríguez; Gregorio Alvarado; Mateo Vargas; Marco López; José Crossa; Juan Burgueño, 2017, "STAD-R Descriptive statistics for experimental designs", hdl:11529/10853, CIMMYT Research Data & Software Repository Network, V2
STAD-R is a set of R programs that performs descriptive statistics, in order to make boxplots and histograms. STAD-R was designed because is necessary before than the thing, check if the dataset have the same number of repetitions, blocks, genotypes, environments, if we have miss...
Dataset / Software
Jan 16, 2017
Ángela Pacheco; Sergio Pérez; Gregorio Alvarado; Jesús Cerón; Francisco Rodríguez; José Crossa; Juan Burgueño, 2017, "RIndSel Selection indeces for plant breeding", hdl:11529/10854, CIMMYT Research Data & Software Repository Network, V1
A genomic selection index (GSI) is a linear combination of genomic estimated breeding values that uses genomic markers to predict the net genetic merit and select parents from a nonphenotyped testing population. RIndSel is a software that calculated some different index like: Eig...
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