DArTseq-derived SNPs for wheat Mexican landrace accessions
hdl:11529/10013
Version: 4– Released: Wed Sep 21 12:03:14 CDT 2016
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Data dictionary
DArTSeq_genotypic_report_data_dictionary.txt
Plain Text - 2 KB - 9 downloads
A description of the columns of information and header row information present in the DArTSeq SNPs csv genotypic results file.
Genotypic data
DArTSeq_102474markers_FJ_Uchrom.txt
Plain Text - 2 MB - 6 downloads
Map file that can be used to visualize genotypic results in Flapjack. Please note that all markers are unmapped and their order does not reflect their actual relative positions in the wheat genome.
DArTSeq_SNPs_mexican_landrace_8584samples_102474markers.csv.zip
application/octet-stream - 123 MB - 8 downloads
DArtSeq SNP call data in a csv file that includes several quality parameters for the genotypic results
DArTSeq_SNPs_mexican_landrace_8584samples_102474markers.FJ_project.zip
application/octet-stream - 331 MB - 4 downloads
DArtSeq SNP call data stored in a Flapjack project format to allow immediate upload to the Flapjack software for visualization and analysis
DArTSeq_SNPs_mexican_landrace_8584samples_102474markers.FJ.txt.zip
application/octet-stream - 116 MB - 4 downloads
DArtSeq SNP call data in a tab-delimited text file. This can be used for uploading to Flapjack in conjunction with the map file. Please note that this matrix is inverted from the normal Flapjack format so the appropriate parameter must be changed in the Flapjack import tool.
Mapping file
SampleIDvsGID_mexican_landrace.txt
Plain Text - 172 KB - 9 downloads
This file can be used to map between the DNA Sample ID used to identify samples in the DArTSeq genotypic results files and the GID (Germplasm ID) that is used to identify CIMMYT germplasm.
Protocol
DArTSeq_wheat_genotyping_protocol.pdf
Adobe PDF - 188 KB - 3 downloads
DNA extraction protocol_for_genotyping_CIMMYT.pdf
Adobe PDF - 85 KB - 2 downloads
Protocol used for DNA extraction prior to genotyping
SNP results
Mexican_Land_Races_results_1-4_SNPs.zip
application/octet-stream - 67 MB - 31 downloads
You do not have permissions to access this file. Restricted Access
Original SNP results recalled for Mexican landraces. Four separate files each contain a different set of markers called for the same set of lines across all four files

"DArTseq-derived SNPs for wheat Mexican landrace accessions", hdl:11529/10013